STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC09g42510DBnaC09g42510D protein. (303 aa)    
Predicted Functional Partners:
BnaA08g13620D
BnaA08g13620D protein.
    
 0.566
BnaA01g08300D
BnaA01g08300D protein.
    
 0.566
BnaC01g09850D
BnaC01g09850D protein.
    
 0.566
BnaA03g58920D
BnaA03g58920D protein.
    
 0.566
BnaA02g30980D
BnaA02g30980D protein.
    
 0.549
BnaA09g03540D
BnaA09g03540D protein.
    
 0.549
BnaC05g01660D
BnaC05g01660D protein.
    
 
 0.537
BnaC05g10020D
BnaC05g10020D protein.
      
 0.535
BnaA02g28930D
BnaA02g28930D protein.
      
 0.514
BnaC06g30650D
BnaC06g30650D protein.
      
 0.504
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.