STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC09g32600DBnaC09g32600D protein. (461 aa)    
Predicted Functional Partners:
BnaA09g26480D
BnaA09g26480D protein.
    
 
 0.709
BnaC01g40950D
BnaC01g40950D protein.
  
 
  0.501
BnaA09g08100D
BnaA09g08100D protein.
  
 
  0.495
BnaC05g43100D
BnaC05g43100D protein.
  
 
  0.476
BnaAnng07950D
BnaAnng07950D protein.
  
 
  0.470
BnaAnng36340D
BnaAnng36340D protein.
  
 
 0.464
BnaCnng24420D
BnaCnng24420D protein.
  
 
  0.457
BnaA04g10030D
BnaA04g10030D protein.
  
 
  0.452
BnaC03g35800D
BnaC03g35800D protein.
  
 
  0.436
BnaA05g20290D
Ubiquitin carboxyl-terminal hydrolase; Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Belongs to the peptidase C19 family.
    
  0.435
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.