STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA09g47080DBnaA09g47080D protein. (202 aa)    
Predicted Functional Partners:
BnaA09g35060D
AP-3 complex subunit beta; Belongs to the adaptor complexes large subunit family.
    
 0.948
BnaC08g26310D
AP-3 complex subunit beta; Belongs to the adaptor complexes large subunit family.
    
 0.948
BnaA09g15310D
BnaA09g15310D protein; Belongs to the adaptor complexes medium subunit family.
   
 
 0.924
BnaC05g35000D
AP-3 complex subunit delta; Part of the AP-3 complex, an adaptor-related complex which seems to be clathrin-associated. The complex is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane and may be directly involved in trafficking to the vacuole. It also function in maintaining the identity of lytic vacuoles and in regulating the transition between storage and lytic vacuoles.
    
 0.897
BnaAnng26940D
AP-3 complex subunit delta; Part of the AP-3 complex, an adaptor-related complex which seems to be clathrin-associated. The complex is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane and may be directly involved in trafficking to the vacuole. It also function in maintaining the identity of lytic vacuoles and in regulating the transition between storage and lytic vacuoles.
    
 0.897
BnaCnng77970D
BnaCnng77970D protein.
    
 0.897
BnaA01g22180D
BnaA01g22180D protein.
    
 0.735
BnaA01g22160D
BnaA01g22160D protein.
    
 0.735
BnaA07g09750D
AP-1 complex subunit gamma.
    
 0.735
BnaC07g12940D
AP-1 complex subunit gamma.
    
 0.735
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.