STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA09g46350DBnaA09g46350D protein. (296 aa)    
Predicted Functional Partners:
BnaA07g00650D
BnaA07g00650D protein.
    
 0.517
BnaA03g18330D
BnaA03g18330D protein.
    
 0.512
BnaC03g21850D
BnaC03g21850D protein.
    
 0.512
BnaC07g48230D
BnaC07g48230D protein.
    
 
 0.491
BnaA07g04030D
BnaA07g04030D protein.
    
   0.476
BnaUnng00040D
BnaUnng00040D protein.
      
 0.471
BnaA09g20180D
BnaA09g20180D protein.
     
 0.456
BnaC05g25500D
BnaC05g25500D protein.
   
 
 0.450
BnaA08g02860D
BnaA08g02860D protein.
   
 
 0.450
BnaA05g13650D
BnaA05g13650D protein.
    
 0.447
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.