STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA09g26440DBnaA09g26440D protein. (128 aa)    
Predicted Functional Partners:
BnaA04g05650D
BnaA04g05650D protein.
    
 0.650
BnaAnng41430D
BnaAnng41430D protein.
    
 0.650
BnaA07g00650D
BnaA07g00650D protein.
   
 0.597
BnaC01g10210D
BnaC01g10210D protein.
    
 0.564
CBL1
BnaC07g34450D protein.
    
 0.564
BnaA02g24990D
BnaA02g24990D protein.
    
 0.534
BnaC02g33120D
BnaC02g33120D protein.
    
 0.534
BnaAnng31750D
BnaAnng31750D protein.
    
 0.534
BnaA03g48110D
BnaA03g48110D protein.
    
 0.522
BnaA03g52310D
BnaA03g52310D protein.
    
 0.512
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.