STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA09g35950DBnaA09g35950D protein. (593 aa)    
Predicted Functional Partners:
BnaA05g30810D
Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.
      
 0.493
BnaC09g28570D
BnaC09g28570D protein.
      
 0.440
BnaA10g28350D
BnaA10g28350D protein.
      
 0.440
BnaA10g28360D
BnaA10g28360D protein.
      
 0.440
BnaCnng34370D
BnaCnng34370D protein.
      
 0.440
BnaC07g33620D
BnaC07g33620D protein.
      
 0.407
BnaA08g05970D
BnaA08g05970D protein.
      
 0.407
BnaA01g17460D
BnaA01g17460D protein.
      
 0.407
BnaC01g21730D
BnaC01g21730D protein.
      
 0.407
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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