Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaA09g35430DBnaA09g35430D protein. (608 aa)    
Predicted Functional Partners:
BnaA09g35490D
BnaA09g35490D protein.
     
 0.715
BnaCnng23380D
BnaCnng23380D protein.
     
 0.712
BnaC01g41510D
BnaC01g41510D protein.
     
 0.712
BnaA09g35290D
BnaA09g35290D protein.
      
 0.706
BnaA09g35200D
BnaA09g35200D protein.
      
 0.706
BnaA05g09510D
BnaA05g09510D protein.
      
 0.702
BnaA01g13220D
BnaA01g13220D protein.
      
 0.702
BnaC01g15300D
BnaC01g15300D protein.
      
 0.702
BnaC03g58430D
BnaC03g58430D protein.
     
 0.676
BnaA02g18720D
BnaA02g18720D protein.
     
 0.674
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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