Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaA02g10630DBnaA02g10630D protein. (589 aa)    
Predicted Functional Partners:
BnaC09g29390D
BnaC09g29390D protein.
   
  
 0.634
BnaA10g06500D
BnaA10g06500D protein.
   
  
 0.634
BnaCnng35440D
BnaCnng35440D protein.
      
 0.607
BnaA02g21950D
BnaA02g21950D protein.
      
 0.589
BnaCnng03920D
BnaCnng03920D protein.
      
 0.499
BnaA10g27630D
BnaA10g27630D protein.
      
 0.499
BnaCnng46660D
Thioredoxin; Belongs to the thioredoxin family.
      
 0.495
BnaA04g22360D
BnaA04g22360D protein.
      
 0.482
BnaC04g06320D
BnaC04g06320D protein.
      
 0.482
BnaA04g15580D
BnaA04g15580D protein.
      
 0.466
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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