Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaC05g43880DBnaC05g43880D protein. (631 aa)    
Predicted Functional Partners:
BnaC03g64840D
BnaC03g64840D protein.
  
 
  
0.675
BnaC09g41870D
BnaC09g41870D protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.
  
  
0.672
BnaA02g19320D
BnaA02g19320D protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.
  
 
 
0.663
BnaC02g25910D
BnaC02g25910D protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.
  
 
 
0.662
BnaC01g43240D
BnaC01g43240D protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.
  
  
0.651
BnaA01g23070D
BnaA01g23070D protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.
  
  
0.649
BnaC01g36990D
BnaC01g36990D protein.
  
 
  
0.646
BnaA01g29460D
BnaA01g29460D protein.
  
 
  
0.644
BnaA05g18490D
BnaA05g18490D protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.
    
  0.638
BnaA05g15410D
BnaA05g15410D protein.
    
   0.626
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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