STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA07g04540DBnaA07g04540D protein. (243 aa)    
Predicted Functional Partners:
BnaC04g04740D
BnaC04g04740D protein.
   
 0.639
BnaC04g50710D
BnaC04g50710D protein.
   
 0.639
BnaA04g26650D
BnaA04g26650D protein.
   
 0.639
MPK5.1
Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.
   
 0.563
BnaC01g26690D
BnaC01g26690D protein.
    
 0.554
BnaA09g17710D
BnaA09g17710D protein.
    
 0.529
BnaC09g37380D
BnaC09g37380D protein.
    
 0.529
BnaA02g04880D
BnaA02g04880D protein.
    
 0.529
BnaCnng51600D
BnaCnng51600D protein.
    
 0.529
BnaA07g25560D
60S ribosomal export protein NMD3; Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit; Belongs to the NMD3 family.
   
 
 0.519
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.