STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA07g04840DBnaA07g04840D protein. (205 aa)    
Predicted Functional Partners:
BnaA09g05180D
BnaA09g05180D protein.
  
  
 0.813
BnaA06g19140D
RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.771
BnaC09g47140D
BnaC09g47140D protein.
     
 0.765
BnaA02g30930D
BnaA02g30930D protein.
     
 0.764
BnaA09g06290D
BnaA09g06290D protein.
     
 0.743
BnaA02g33630D
BnaA02g33630D protein.
     
 0.743
BnaC06g30200D
BnaC06g30200D protein.
     
 0.743
BnaC02g42370D
BnaC02g42370D protein.
     
 0.743
BnaC08g14950D
BnaA08g25270D protein.
     
 0.645
BnaC08g44960D
BnaC08g44960D protein.
     
 0.639
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.