STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC05g44790DBnaC05g44790D protein. (434 aa)    
Predicted Functional Partners:
BnaA09g42470D
BnaA09g42470D protein.
  
     0.529
BnaAnng03780D
BnaAnng03780D protein.
  
     0.527
BnaC03g65060D
BnaC03g65060D protein.
  
     0.527
BnaC01g20640D
BnaC01g20640D protein.
  
     0.526
BnaA06g13990D
BnaA06g13990D protein.
  
     0.525
BnaC09g13380D
BnaC09g13380D protein.
  
     0.525
BnaA09g04540D
BnaA09g04540D protein.
  
     0.523
BnaA02g19090D
BnaA02g19090D protein.
  
     0.523
BnaA08g04590D
BnaA08g04590D protein.
  
     0.523
BnaCnng53540D
BnaCnng53540D protein.
  
     0.523
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.