Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaA06g15000DBnaA06g15000D protein. (620 aa)    
Predicted Functional Partners:
BnaA03g50470D
BnaA03g50470D protein.
      
 0.634
BnaC03g74330D
BnaC03g74330D protein.
    
 0.534
BnaC08g15680D
BnaC08g15680D protein.
  
  0.451
BnaCnng65160D
BnaCnng65160D protein.
  
  0.428
BnaC02g02050D
BnaC02g02050D protein.
    
 
 0.420
BnaCnng48080D
BnaCnng48080D protein.
  
  0.416
BnaA05g11580D
BnaA05g11580D protein.
  
  
  0.415
BnaA07g00650D
BnaA07g00650D protein.
    
  0.409
BnaCnng45690D
BnaCnng45690D protein.
  
  0.409
BnaC04g13360D
BnaC04g13360D protein; Belongs to the protein kinase superfamily.
  
  
  0.406
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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