Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaA06g14550DBnaA06g14550D protein; Belongs to the protein kinase superfamily. (381 aa)    
Predicted Functional Partners:
BnaA01g34960D
BnaA01g34960D protein.
      
 0.611
BnaA01g05930D
BnaA01g05930D protein.
      
 0.596
BnaCnng70220D
BnaCnng70220D protein.
      
 0.595
BnaAnng07740D
BnaAnng07740D protein.
   
  
 0.533
BnaA06g14570D
BnaA06g14570D protein.
     
 0.470
BnaC05g16030D
BnaC05g16030D protein.
     
 0.470
BnaC07g15240D
BnaC07g15240D protein.
     
 0.470
BnaC08g19400D
BnaC08g19400D protein.
     
 0.470
BnaA02g36110D
BnaA02g36110D protein.
     
 0.440
BnaA09g03720D
BnaA09g03720D protein.
      
 0.436
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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