STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaCnng05620DMediator of RNA polymerase II transcription subunit 11; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (115 aa)    
Predicted Functional Partners:
BnaA05g36640D
BnaA05g36640D protein.
    
 0.754
BnaC05g51820D
BnaC05g51820D protein.
    
 0.754
BnaA04g12820D
BnaA04g12820D protein.
     
 0.750
BnaA07g07820D
BnaA07g07820D protein.
  
  
 0.739
BnaA05g13960D
BnaA05g13960D protein.
  
  
 0.738
BnaA05g13940D
BnaA05g13940D protein.
  
  
 0.736
BnaC06g10690D
BnaC06g10690D protein.
  
  
 0.734
BnaC03g36240D
BnaC03g36240D protein.
     
 0.710
BnaA05g29270D
BnaA05g29270D protein.
     
 0.710
BnaCnng24250D
BnaCnng24250D protein.
     
 0.710
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.