STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA07g04880DBnaA07g04880D protein. (131 aa)    
Predicted Functional Partners:
BnaA01g30390D
BnaA01g30390D protein.
   
    0.701
BnaC01g38600D
BnaC01g38600D protein.
   
    0.701
BnaA09g40430D
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.
  
  
 0.550
BnaC05g37200D
BnaC05g37200D protein.
   
  
 0.533
BnaC03g54660D
BnaC03g54660D protein.
   
    0.513
BnaA10g13190D
Adenylate kinase isoenzyme 6 homolog; Broad-specificity nucleoside monophosphate (NMP) kinase that catalyzes the reversible transfer of the terminal phosphate group between nucleoside triphosphates and monophosphates. Has also ATPase activity; Belongs to the adenylate kinase family. AK6 subfamily.
     
 0.494
BnaA09g15760D
BnaA09g15760D protein.
     
 0.494
BnaC01g42150D
BnaC01g42150D protein.
     
 0.494
BnaC08g09090D
ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.
   
  
 0.488
BnaA09g08170D
BnaA09g08170D protein.
      
 0.468
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.