STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC02g36180DBnaC02g36180D protein; Belongs to the peptidase A1 family. (177 aa)    
Predicted Functional Partners:
BnaCnng58380D
BnaCnng58380D protein; Belongs to the peptidase A1 family.
  
     0.483
BnaA05g36440D
BnaA05g36440D protein; Belongs to the peptidase A1 family.
      
 0.476
BnaC04g08620D
BnaC04g08620D protein; Belongs to the peptidase A1 family.
      
 0.471
BnaC02g03610D
BnaC02g03610D protein; Belongs to the peptidase A1 family.
      
 0.467
BnaC05g22030D
BnaC05g22030D protein; Belongs to the peptidase A1 family.
      
 0.437
BnaAnng08660D
BnaAnng08660D protein; Belongs to the peptidase A1 family.
      
 0.437
BnaA06g35490D
BnaA06g35490D protein.
      
 0.433
BnaA02g25500D
BnaA02g25500D protein.
      
 0.433
BnaA03g58620D
BnaA03g58620D protein; Belongs to the peptidase A1 family.
  
     0.423
BnaC03g76810D
BnaC03g76810D protein.
   
 
 0.420
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.