Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaC01g19480DBnaC01g19480D protein. (313 aa)    
Predicted Functional Partners:
BnaC05g37760D
BnaC05g37760D protein.
  
   
 0.581
BnaC02g09380D
BnaC02g09380D protein.
  
  
  0.517
BnaC08g45350D
BnaC08g45350D protein; Belongs to the leguminous lectin family.
  
     0.515
BnaA02g05500D
BnaA02g05500D protein.
  
  
  0.513
BnaCnng75350D
BnaCnng75350D protein.
  
     0.513
BnaC04g36400D
BnaC04g36400D protein.
  
 
  0.512
BnaA01g06900D
BnaA01g06900D protein.
  
  
  0.512
BnaC06g13950D
BnaC06g13950D protein; Belongs to the glycosyl hydrolase 17 family.
      
 0.509
BnaC09g54210D
BnaC09g54210D protein.
  
     0.509
BnaC09g54220D
BnaC09g54220D protein.
  
     0.508
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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