Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaA04g25210DBnaA04g25210D protein. (712 aa)    
Predicted Functional Partners:
BnaC06g24030D
BnaC06g24030D protein.
     
 0.466
BnaC09g24060D
BnaC09g24060D protein.
      
 0.463
BnaA07g00650D
BnaA07g00650D protein.
    
  0.409
BnaA08g24960D
BnaA08g24960D protein.
      
 0.403
BnaC08g15310D
BnaC08g15310D protein.
      
 0.403
BnaA05g11580D
BnaA05g11580D protein.
  
  
  0.400
BnaC04g48010D
BnaC04g48010D protein.
  
  
  0.400
BnaC05g48590D
BnaC05g48590D protein.
  
     0.400
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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