STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA03g53960DBnaA03g53960D protein. (202 aa)    
Predicted Functional Partners:
BnaC09g43110D
BnaC09g43110D protein.
   
 0.541
BnaC02g00340D
BnaC02g00340D protein.
    
 0.540
BnaC02g00870D
BnaC02g00870D protein.
     
 0.504
BnaC04g56470D
BnaC04g56470D protein.
    
 0.501
BnaA01g32830D
BnaA01g32830D protein.
     
 0.499
BnaA06g37110D
5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. Acts as an endogenous post-transcriptional gene silencing (PTGS) suppressor.
      
 0.493
BnaC01g37590D
BnaC01g37590D protein.
      
 0.493
BnaA09g15880D
5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. Acts as an endogenous post-transcriptional gene silencing (PTGS) suppressor.
      
 0.493
BnaCnng37390D
5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. Acts as an endogenous post-transcriptional gene silencing (PTGS) suppressor.
      
 0.493
BnaA02g34980D
BnaA02g34980D protein.
      
 0.493
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.