Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BnaA01g08150D | BnaA04g15880D | A0A078HBR9 | A0A078GVQ6 | BnaA01g08150D protein. | Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. | 0.788 |
BnaA01g08150D | BnaA08g30780D | A0A078HBR9 | A0A078JRK8 | BnaA01g08150D protein. | BnaA08g30780D protein. | 0.901 |
BnaA01g08150D | BnaA09g19760D | A0A078HBR9 | A0A078I8D9 | BnaA01g08150D protein. | Ferredoxin--NADP reductase, chloroplastic; Belongs to the ferredoxin--NADP reductase type 1 family. | 0.699 |
BnaA01g08150D | BnaC03g75370D | A0A078HBR9 | A0A078IQU2 | BnaA01g08150D protein. | BnaC03g75370D protein. | 0.466 |
BnaA01g08150D | BnaC05g13040D | A0A078HBR9 | A0A078HQV8 | BnaA01g08150D protein. | BnaC05g13040D protein. | 0.466 |
BnaA01g08150D | BnaC05g23490D | A0A078HBR9 | A0A078F572 | BnaA01g08150D protein. | Ferredoxin--NADP reductase, chloroplastic; Belongs to the ferredoxin--NADP reductase type 1 family. | 0.699 |
BnaA01g08150D | BnaC05g26060D | A0A078HBR9 | A0A078G5Z6 | BnaA01g08150D protein. | BnaC05g26060D protein. | 0.577 |
BnaA01g08150D | BnaC06g15470D | A0A078HBR9 | A0A078F3B2 | BnaA01g08150D protein. | Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family. | 0.983 |
BnaA01g08150D | ndhC | A0A078HBR9 | D1L8P3 | BnaA01g08150D protein. | NADH-quinone oxidoreductase subunit A; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 3 family. | 0.835 |
BnaA04g15880D | BnaA01g08150D | A0A078GVQ6 | A0A078HBR9 | Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. | BnaA01g08150D protein. | 0.788 |
BnaA04g15880D | BnaA08g30780D | A0A078GVQ6 | A0A078JRK8 | Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. | BnaA08g30780D protein. | 0.788 |
BnaA04g15880D | BnaA09g19760D | A0A078GVQ6 | A0A078I8D9 | Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. | Ferredoxin--NADP reductase, chloroplastic; Belongs to the ferredoxin--NADP reductase type 1 family. | 0.862 |
BnaA04g15880D | BnaC03g16250D | A0A078GVQ6 | A0A078I6P0 | Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. | BnaC03g16250D protein. | 0.917 |
BnaA04g15880D | BnaC03g75370D | A0A078GVQ6 | A0A078IQU2 | Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. | BnaC03g75370D protein. | 0.779 |
BnaA04g15880D | BnaC05g13040D | A0A078GVQ6 | A0A078HQV8 | Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. | BnaC05g13040D protein. | 0.779 |
BnaA04g15880D | BnaC05g23490D | A0A078GVQ6 | A0A078F572 | Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. | Ferredoxin--NADP reductase, chloroplastic; Belongs to the ferredoxin--NADP reductase type 1 family. | 0.875 |
BnaA04g15880D | BnaC05g26060D | A0A078GVQ6 | A0A078G5Z6 | Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. | BnaC05g26060D protein. | 0.779 |
BnaA04g15880D | BnaC06g15470D | A0A078GVQ6 | A0A078F3B2 | Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. | Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family. | 0.758 |
BnaA04g15880D | ndhC | A0A078GVQ6 | D1L8P3 | Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. | NADH-quinone oxidoreductase subunit A; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 3 family. | 0.858 |
BnaA08g30780D | BnaA01g08150D | A0A078JRK8 | A0A078HBR9 | BnaA08g30780D protein. | BnaA01g08150D protein. | 0.901 |
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