STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA01g19200DBnaA01g19200D protein. (684 aa)    
Predicted Functional Partners:
BnaC09g17570D
BnaC09g17570D protein.
  
     0.523
BnaC08g11580D
BnaC08g11580D protein.
  
 
  0.521
BnaC06g09930D
BnaC06g09930D protein.
  
 
  0.510
BnaA01g24490D
BnaA01g24490D protein.
  
     0.486
BnaCnng50580D
BnaCnng50580D protein.
  
 
  0.462
BnaC08g40810D
BnaC08g40810D protein.
  
     0.458
BnaA09g46730D
BnaA09g46730D protein.
  
     0.458
BnaC02g42130D
BnaC02g42130D protein.
  
     0.457
BnaCnng04870D
BnaCnng04870D protein.
  
     0.453
BnaCnng64530D
BnaCnng64530D protein.
  
     0.451
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.