BnaA09g53810D protein (Brassica napus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

BnaA09g53810D

BnaA09g53810D protein. (329 aa)

Predicted Functional Partners:

BnaA06g13550D

0.842

BnaAnng15940D

0.747

BnaA07g04060D

0.708

BnaA08g19680D

0.673

BnaA09g19920D

0.588

BnaCnng70130D

0.588

BnaC05g12080D

0.584

BnaA06g10530D

0.584

BnaA09g56560D

0.584

BnaA06g15400D

0.568

Your Current Organism:

Brassica napus

NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BnaA06g10530D	BnaA07g04060D	A0A078HE14	A0A078HFX2	BnaA06g10530D protein.	BnaA07g04060D protein.	0.673
BnaA06g10530D	BnaA08g19680D	A0A078HE14	A0A078HCG9	BnaA06g10530D protein.	BnaA08g19680D protein.	0.504
BnaA06g10530D	BnaA09g53810D	A0A078HE14	A0A078GX02	BnaA06g10530D protein.	BnaA09g53810D protein.	0.584
BnaA06g13550D	BnaA09g53810D	A0A078GNA0	A0A078GX02	BnaA06g13550D protein.	BnaA09g53810D protein.	0.842
BnaA06g15400D	BnaA09g53810D	A0A078F4A0	A0A078GX02	BnaA06g15400D protein.	BnaA09g53810D protein.	0.568
BnaA06g15400D	BnaAnng15940D	A0A078F4A0	A0A078J7G4	BnaA06g15400D protein.	BnaAnng15940D protein.	0.549
BnaA07g04060D	BnaA06g10530D	A0A078HFX2	A0A078HE14	BnaA07g04060D protein.	BnaA06g10530D protein.	0.673
BnaA07g04060D	BnaA08g19680D	A0A078HFX2	A0A078HCG9	BnaA07g04060D protein.	BnaA08g19680D protein.	0.589
BnaA07g04060D	BnaA09g53810D	A0A078HFX2	A0A078GX02	BnaA07g04060D protein.	BnaA09g53810D protein.	0.708
BnaA07g04060D	BnaA09g56560D	A0A078HFX2	A0A078ITT7	BnaA07g04060D protein.	BnaA09g56560D protein.	0.673
BnaA07g04060D	BnaC05g12080D	A0A078HFX2	A0A078H3Y4	BnaA07g04060D protein.	BnaC05g12080D protein.	0.673
BnaA08g19680D	BnaA06g10530D	A0A078HCG9	A0A078HE14	BnaA08g19680D protein.	BnaA06g10530D protein.	0.504
BnaA08g19680D	BnaA07g04060D	A0A078HCG9	A0A078HFX2	BnaA08g19680D protein.	BnaA07g04060D protein.	0.589
BnaA08g19680D	BnaA09g53810D	A0A078HCG9	A0A078GX02	BnaA08g19680D protein.	BnaA09g53810D protein.	0.673
BnaA08g19680D	BnaA09g56560D	A0A078HCG9	A0A078ITT7	BnaA08g19680D protein.	BnaA09g56560D protein.	0.504
BnaA08g19680D	BnaC05g12080D	A0A078HCG9	A0A078H3Y4	BnaA08g19680D protein.	BnaC05g12080D protein.	0.504
BnaA09g19920D	BnaA09g53810D	A0A078IAV9	A0A078GX02	BnaA09g19920D protein.	BnaA09g53810D protein.	0.588
BnaA09g19920D	BnaAnng15940D	A0A078IAV9	A0A078J7G4	BnaA09g19920D protein.	BnaAnng15940D protein.	0.634
BnaA09g53810D	BnaA06g10530D	A0A078GX02	A0A078HE14	BnaA09g53810D protein.	BnaA06g10530D protein.	0.584
BnaA09g53810D	BnaA06g13550D	A0A078GX02	A0A078GNA0	BnaA09g53810D protein.	BnaA06g13550D protein.	0.842