STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC05g09890DBnaC05g09890D protein. (399 aa)    
Predicted Functional Partners:
BnaC04g32480D
BnaC04g32480D protein.
  
     0.507
BnaC07g30930D
BnaC07g30930D protein.
  
     0.503
BnaCnng08200D
BnaCnng08200D protein.
  
     0.495
BnaA09g30390D
BnaA09g30390D protein.
  
     0.481
BnaCnng44710D
BnaCnng44710D protein.
  
     0.473
BnaC06g23880D
BnaC06g23880D protein.
      
 0.470
BnaC09g11660D
BnaC09g11660D protein.
      
 0.470
BnaA09g11260D
BnaA09g11260D protein.
      
 0.470
BnaA02g16200D
BnaA02g16200D protein.
      
 0.470
BnaA08g04620D
BnaA08g04620D protein.
      
 0.465
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.