Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaAnng03860DBnaAnng03860D protein. (189 aa)    
Predicted Functional Partners:
BnaC04g40270D
BnaC04g40270D protein.
  
     0.509
BnaC09g40830D
BnaC09g40830D protein.
  
     0.487
BnaC09g42640D
BnaC09g42640D protein.
  
     0.483
BnaA02g25780D
BnaA02g25780D protein.
  
     0.482
BnaC05g09590D
BnaC05g09590D protein.
  
     0.473
BnaC09g12460D
BnaC09g12460D protein.
  
     0.471
BnaC06g03840D
BnaC06g03840D protein.
  
     0.470
BnaCnng78130D
BnaCnng78130D protein.
  
     0.461
BnaA05g32390D
BnaA05g32390D protein.
  
     0.460
BnaA09g11930D
BnaA09g11930D protein.
  
     0.459
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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