STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC07g15500DBnaC07g15500D protein. (368 aa)    
Predicted Functional Partners:
BnaC04g02780D
BnaC04g02780D protein.
    
 0.913
BnaA02g06610D
BnaA02g06610D protein.
    
 0.873
BnaA10g29620D
BnaA10g29620D protein.
    
 0.873
BnaC04g29050D
BnaC04g29050D protein.
    
 0.854
BnaC02g26240D
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
   
 0.787
BnaC09g37610D
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
   
 0.787
BnaC03g73190D
BnaC03g73190D protein.
   
 
  0.678
BnaC09g42110D
BnaC09g42110D protein.
   
 
  0.555
BnaC09g42100D
BnaC09g42100D protein.
   
 
  0.555
BnaA04g28020D
Serine/threonine-protein kinase RIO1; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family.
     
 0.490
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.