STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC06g10230DBnaC06g10230D protein. (491 aa)    
Predicted Functional Partners:
BnaA05g19600D
BnaA05g19600D protein.
  
   
 0.554
BnaC05g30720D
BnaC05g30720D protein.
  
   
 0.551
BnaC06g42220D
BnaC06g42220D protein.
  
   
 0.496
BnaC06g43520D
BnaC06g43520D protein.
  
   
 0.495
BnaA02g09950D
BnaA02g09950D protein.
      
 0.465
BnaCnng64030D
BnaCnng64030D protein.
      
 0.465
BnaA02g26940D
Auxin efflux carrier component; May act as a component of the auxin efflux carrier. Belongs to the auxin efflux carrier (TC 2.A.69.1) family.
    
 
 0.453
BnaC02g47640D
Auxin efflux carrier component; May act as a component of the auxin efflux carrier. Belongs to the auxin efflux carrier (TC 2.A.69.1) family.
    
 
 0.453
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.