STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC07g16590DProtein phosphatase; Belongs to the PP2C family. (410 aa)    
Predicted Functional Partners:
BnaC06g27510D
BnaC06g27510D protein.
  
    0.512
BnaC09g26100D
BnaC09g26100D protein.
    
 
 0.479
BnaC04g00540D
BnaC04g00540D protein.
    
 
 0.472
BnaC09g00700D
BnaC09g00700D protein.
    
 
 0.468
BnaA09g01550D
BnaA09g01550D protein.
    
 
 0.468
BnaC03g30100D
BnaC03g30100D protein.
      
 0.465
BnaA03g55770D
BnaA03g55770D protein.
      
 0.404
BnaC05g36700D
BnaC05g36700D protein.
    
 
 0.402
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.