STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC04g26920DBnaC04g26920D protein. (769 aa)    
Predicted Functional Partners:
BnaA05g26920D
BnaA05g26920D protein.
  
 
 
0.601
BnaA07g24800D
BnaA07g24800D protein.
  
 0.572
BnaC06g04830D
BnaC06g04830D protein.
  
 0.572
BnaA02g07780D
BnaA02g07780D protein.
   
  
 0.517
BnaC09g33670D
BnaC09g33670D protein.
   
  
 0.517
BnaA10g03370D
BnaA10g03370D protein.
   
 
 0.515
BnaC02g47000D
BnaC02g47000D protein.
   
 
 0.515
BnaA04g29030D
BnaA04g29030D protein.
   
 
 0.515
BnaC09g37700D
BnaC09g37700D protein.
   
  
 0.505
BnaA07g37950D
BnaA07g37950D protein.
   
 
 0.499
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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