Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaA03g49470DBnaA03g49470D protein. (405 aa)    
Predicted Functional Partners:
BnaA07g04060D
BnaA07g04060D protein.
    
 0.700
BnaA08g19680D
BnaA08g19680D protein.
    
 0.660
BnaA03g18330D
BnaA03g18330D protein.
    
 0.623
BnaC03g21850D
BnaC03g21850D protein.
    
 0.623
BnaC05g12080D
BnaC05g12080D protein.
    
 0.580
BnaA06g10530D
BnaA06g10530D protein.
    
 0.580
BnaA09g56560D
BnaA09g56560D protein.
    
 0.580
BnaC08g02310D
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
 0.562
BnaCnng65600D
BnaCnng65600D protein.
  
 
  0.514
BnaCnng04870D
BnaCnng04870D protein.
  
 
  0.510
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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