STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC04g27090DBnaC04g27090D protein. (146 aa)    
Predicted Functional Partners:
BnaA06g16420D
BnaA06g16420D protein.
    
 0.694
BnaA06g36810D
BnaA06g36810D protein.
    
 0.694
BnaC08g42880D
BnaC08g42880D protein.
    
 0.694
BnaC08g43430D
BnaC08g43430D protein.
    
 0.694
BnaA08g26690D
BnaA08g26690D protein.
    
 0.694
BnaC07g16980D
Transcription factor subunit NF-YC13.
    
 0.694
BnaCnng06510D
BnaCnng06510D protein.
    
 0.694
BnaCnng15880D
BnaCnng15880D protein.
    
 0.694
BnaAnng22700D
BnaAnng22700D protein.
    
 0.694
BnaCnng02770D
BnaCnng02770D protein.
    
 
 0.662
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.