STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA09g09540DBnaA09g09540D protein. (112 aa)    
Predicted Functional Partners:
BnaC09g00060D
BnaC09g00060D protein; Belongs to the TrpA family.
  
 0.974
BnaA09g00950D
BnaA09g00950D protein; Belongs to the TrpA family.
  
 0.974
BnaC02g02230D
BnaC02g02230D protein.
  
 
 0.959
BnaC03g44420D
BnaC03g44420D protein.
  
 
 0.940
BnaA03g57920D
BnaA03g57920D protein.
  
 
 0.940
BnaA09g08290D
BnaA09g08290D protein.
    
 0.929
BnaC09g39860D
BnaC09g39860D protein.
  
 
 0.872
BnaA10g16850D
BnaA10g16850D protein.
  
 
 0.872
BnaC02g19990D
BnaC02g19990D protein.
  
 
 0.851
BnaC02g20000D
BnaC02g20000D protein.
  
 
 0.851
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.