BnaC06g10320D protein (Brassica napus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BnaC06g10320D

BnaC06g10320D protein. (533 aa)

Predicted Functional Partners:

BnaA02g24140D

0.856

BnaC09g38430D

0.771

BnaA05g12250D

0.737

BnaC03g16630D

0.737

BnaA04g17280D

0.737

BnaA10g30270D

0.737

BnaA03g55110D

0.701

BnaCnng51160D

0.701

BnaCnng54670D

0.701

BnaA09g09660D

0.700

Your Current Organism:

Brassica napus

NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BnaA02g24140D	BnaA03g55110D	A0A078IM56	A0A078IQF0	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	BnaA03g55110D protein; Belongs to the ubiquitin-conjugating enzyme family.	0.789
BnaA02g24140D	BnaA04g17280D	A0A078IM56	A0A078GX15	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	BnaA04g17280D protein; Belongs to the ubiquitin-activating E1 family.	0.864
BnaA02g24140D	BnaA05g12250D	A0A078IM56	A0A078FBG7	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	BnaA05g12250D protein; Belongs to the ubiquitin-activating E1 family.	0.864
BnaA02g24140D	BnaA09g09660D	A0A078IM56	A0A078GXT0	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	BnaA09g09660D protein; Belongs to the ubiquitin-conjugating enzyme family.	0.917
BnaA02g24140D	BnaA10g30270D	A0A078IM56	A0A078JK01	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	BnaA10g30270D protein; Belongs to the ubiquitin-activating E1 family.	0.864
BnaA02g24140D	BnaC03g16630D	A0A078IM56	A0A078GHE3	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	BnaC03g16630D protein; Belongs to the ubiquitin-activating E1 family.	0.864
BnaA02g24140D	BnaC06g10320D	A0A078IM56	A0A078H1J6	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	BnaC06g10320D protein.	0.856
BnaA02g24140D	BnaC09g38430D	A0A078IM56	A0A078FNQ7	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	BnaC09g38430D protein.	0.907
BnaA02g24140D	BnaCnng51160D	A0A078IM56	A0A078JFX2	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	BnaCnng51160D protein; Belongs to the ubiquitin-conjugating enzyme family.	0.789
BnaA02g24140D	BnaCnng54670D	A0A078IM56	A0A078JIH7	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	BnaCnng54670D protein; Belongs to the ubiquitin-conjugating enzyme family.	0.789
BnaA03g55110D	BnaA02g24140D	A0A078IQF0	A0A078IM56	BnaA03g55110D protein; Belongs to the ubiquitin-conjugating enzyme family.	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	0.789
BnaA03g55110D	BnaA04g17280D	A0A078IQF0	A0A078GX15	BnaA03g55110D protein; Belongs to the ubiquitin-conjugating enzyme family.	BnaA04g17280D protein; Belongs to the ubiquitin-activating E1 family.	0.901
BnaA03g55110D	BnaA05g12250D	A0A078IQF0	A0A078FBG7	BnaA03g55110D protein; Belongs to the ubiquitin-conjugating enzyme family.	BnaA05g12250D protein; Belongs to the ubiquitin-activating E1 family.	0.901
BnaA03g55110D	BnaA09g09660D	A0A078IQF0	A0A078GXT0	BnaA03g55110D protein; Belongs to the ubiquitin-conjugating enzyme family.	BnaA09g09660D protein; Belongs to the ubiquitin-conjugating enzyme family.	0.746
BnaA03g55110D	BnaA10g30270D	A0A078IQF0	A0A078JK01	BnaA03g55110D protein; Belongs to the ubiquitin-conjugating enzyme family.	BnaA10g30270D protein; Belongs to the ubiquitin-activating E1 family.	0.901
BnaA03g55110D	BnaC03g16630D	A0A078IQF0	A0A078GHE3	BnaA03g55110D protein; Belongs to the ubiquitin-conjugating enzyme family.	BnaC03g16630D protein; Belongs to the ubiquitin-activating E1 family.	0.901
BnaA03g55110D	BnaC06g10320D	A0A078IQF0	A0A078H1J6	BnaA03g55110D protein; Belongs to the ubiquitin-conjugating enzyme family.	BnaC06g10320D protein.	0.701
BnaA03g55110D	BnaC09g38430D	A0A078IQF0	A0A078FNQ7	BnaA03g55110D protein; Belongs to the ubiquitin-conjugating enzyme family.	BnaC09g38430D protein.	0.833
BnaA03g55110D	BnaCnng51160D	A0A078IQF0	A0A078JFX2	BnaA03g55110D protein; Belongs to the ubiquitin-conjugating enzyme family.	BnaCnng51160D protein; Belongs to the ubiquitin-conjugating enzyme family.	0.901
BnaA03g55110D	BnaCnng54670D	A0A078IQF0	A0A078JIH7	BnaA03g55110D protein; Belongs to the ubiquitin-conjugating enzyme family.	BnaCnng54670D protein; Belongs to the ubiquitin-conjugating enzyme family.	0.901