STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA07g03140DBnaA07g03140D protein. (870 aa)    
Predicted Functional Partners:
BnaA09g03820D
BnaA09g03820D protein.
    
 
 0.485
BnaC07g15860D
BnaC07g15860D protein.
  
     0.432
BnaC02g48580D
BnaC02g48580D protein.
  
     0.426
BnaA09g06260D
BnaA09g06260D protein.
      
 0.400
BnaC09g50880D
BnaC09g50880D protein.
      
 0.400
BnaC09g50890D
BnaC09g50890D protein.
      
 0.400
BnaAnng26470D
BnaAnng26470D protein.
      
 0.400
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.