STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC09g13080DBnaC09g13080D protein. (203 aa)    
Predicted Functional Partners:
BnaA05g18700D
BnaA05g18700D protein.
  
     0.523
BnaC09g24200D
BnaC09g24200D protein.
  
     0.520
BnaC03g46960D
BnaC03g46960D protein.
  
   
 0.509
BnaAnng07630D
CASP-like protein; Belongs to the Casparian strip membrane proteins (CASP) family.
  
     0.503
BnaC04g08450D
BnaC04g08450D protein.
  
     0.502
BnaC03g17020D
BnaC03g17020D protein.
  
     0.491
BnaC05g31690D
BnaC05g31690D protein.
  
     0.491
BnaC01g41490D
BnaC01g41490D protein.
  
     0.488
BnaA08g26900D
BnaA08g26900D protein.
  
     0.484
BnaC06g03880D
BnaC06g03880D protein.
  
     0.482
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.