STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC04g24160DBnaC04g24160D protein; Belongs to the peptidase M16 family. (974 aa)    
Predicted Functional Partners:
BnaA04g05330D
BnaA04g05330D protein.
    
  0.772
BnaC03g72450D
BnaC03g72450D protein.
    
  0.610
BnaA09g39760D
BnaA04g27270D protein.
    
  0.610
BnaA07g09990D
BnaA07g09990D protein.
    
  0.610
BnaA08g20480D
BnaA08g20480D protein.
    
  0.610
BnaCnng30170D
BnaCnng30170D protein.
    
  0.610
BnaC05g36750D
BnaC05g36750D protein; Belongs to the peptidase M16 family.
   
 
 0.503
BnaA05g27510D
BnaA05g27510D protein.
   
    0.499
BnaC01g41270D
BnaC01g41270D protein.
   
    0.499
BnaC09g40570D
BnaC09g40570D protein; Belongs to the TPP enzyme family.
     
 0.467
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.