Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaA05g08950DBnaA05g08950D protein. (540 aa)    
Predicted Functional Partners:
BnaCnng24490D
BnaCnng24490D protein.
  
  
 
0.903
BnaC06g02870D
BnaC06g02870D protein.
      
 0.706
BnaC03g13050D
BnaC03g13050D protein; Belongs to the cytochrome P450 family.
      
 0.600
BnaA08g02210D
BnaA08g02210D protein; Belongs to the disease resistance NB-LRR family.
      
 0.586
BnaA10g09260D
BnaA10g09260D protein.
      
 0.573
BnaA03g11670D
BnaA03g11670D protein.
      
 0.573
BnaCnng19280D
BnaCnng19280D protein.
      
 0.568
BnaAnng29540D
4-hydroxy-4-methyl-2-oxoglutarate aldolase; Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions.
    
 
 0.567
BnaA05g13970D
BnaA05g13970D protein.
      
 0.565
BnaA05g13950D
BnaA05g13950D protein.
      
 0.565
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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