Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaA08g26380DBnaA08g26380D protein. (177 aa)    
Predicted Functional Partners:
BnaC03g44690D
BnaC03g44690D protein.
    
 
 0.665
BnaA04g05280D
BnaA04g05280D protein.
   
   0.546
BnaC04g55940D
BnaC04g55940D protein; Belongs to the complex I 75 kDa subunit family.
    
   0.541
BnaA02g34960D
BnaA02g34960D protein; Belongs to the complex I 20 kDa subunit family.
    
   0.527
BnaA09g17850D
BnaA09g17850D protein; Belongs to the disease resistance NB-LRR family.
  
     0.510
BnaA04g15990D
BnaA04g15990D protein.
  
 
   0.501
BnaAnng39120D
BnaAnng39120D protein.
  
     0.487
BnaCnng46740D
BnaCnng46740D protein.
  
     0.481
BnaA06g02950D
BnaA06g02950D protein.
  
     0.457
BnaA04g05640D
BnaA04g05640D protein.
      
 0.443
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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