STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA01g17280DBnaA01g17280D protein. (110 aa)    
Predicted Functional Partners:
BnaA02g25630D
BnaA02g25630D protein.
  
     0.452
BnaC02g47600D
BnaC02g47600D protein.
  
     0.447
BnaC09g38530D
BnaC09g38530D protein; Belongs to the peptidase A1 family.
  
     0.441
BnaA04g29170D
BnaA04g29170D protein.
  
 
   0.438
BnaC06g41830D
BnaC06g41830D protein.
  
     0.438
BnaA05g35680D
BnaA05g35680D protein.
  
     0.437
BnaC04g50210D
BnaC04g50210D protein.
  
 
  0.428
BnaC03g73750D
BnaC03g73750D protein.
  
     0.425
BnaC04g00030D
BnaC04g00030D protein.
  
     0.422
BnaC03g61250D
BnaC03g61250D protein.
  
     0.419
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.