STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC04g44490DBnaC04g44490D protein. (329 aa)    
Predicted Functional Partners:
BnaC02g20630D
BnaC02g20630D protein.
      
 0.470
BnaCnng57860D
Auxin-responsive protein; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.
  
     0.467
BnaA03g52290D
BnaA03g52290D protein.
      
 0.465
BnaA01g24690D
FRIGIDA-like protein; Belongs to the Frigida family.
  
     0.463
BnaA02g25810D
BnaA02g25810D protein.
  
     0.454
BnaCnng13150D
Auxin-responsive protein; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.
  
     0.454
BnaC01g31510D
FRIGIDA-like protein; Belongs to the Frigida family.
  
     0.454
BnaA10g13650D
BnaA10g13650D protein.
  
     0.452
BnaA05g27470D
BnaA05g27470D protein.
  
 
   0.450
BnaC02g47310D
Auxin-responsive protein; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.
  
     0.450
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.