STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA09g45910DBnaA09g45910D protein. (212 aa)    
Predicted Functional Partners:
BnaC01g39730D
BnaC01g39730D protein.
   
 0.888
BnaC05g44290D
BnaC05g44290D protein.
   
 0.888
BnaC03g35450D
BnaC03g35450D protein.
   
 0.884
BnaA05g29960D
BnaA05g29960D protein.
   
 0.884
BnaCnng37320D
BnaCnng37320D protein.
  
0.841
BnaC05g29650D
BnaC05g29650D protein.
  
0.840
BnaA05g16850D
BnaA05g16850D protein.
  
0.840
BnaA01g24430D
BnaA01g24430D protein.
  
0.839
BnaCnng14310D
BnaCnng14310D protein.
  
0.838
BnaC02g02500D
Coatomer subunit delta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network.
   
 0.794
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.