STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA02g07640DBnaA02g07640D protein. (692 aa)    
Predicted Functional Partners:
BnaA07g03400D
BnaA07g03400D protein.
    
 0.937
BnaCnng23040D
BnaCnng23040D protein.
   
 0.936
BnaC07g03320D
BnaC07g03320D protein.
   
 0.921
BnaC09g42110D
BnaC09g42110D protein.
   
 0.886
BnaC09g42100D
BnaC09g42100D protein.
   
 0.886
BnaC05g12370D
BnaC05g12370D protein.
   
 0.879
BnaA09g56360D
BnaA09g56360D protein; Belongs to the DEAD box helicase family.
   
 0.879
BnaA08g13850D
BnaA08g13850D protein.
   
 
 0.868
BnaC04g03420D
BnaC04g03420D protein.
   
 0.868
BnaC03g63890D
Small nuclear ribonucleoprotein-associated protein.
    
 0.861
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.