STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC08g19610DBnaC08g19610D protein. (243 aa)    
Predicted Functional Partners:
BnaA09g52040D
S-acyltransferase; Belongs to the DHHC palmitoyltransferase family.
      
 0.493
BnaCnng36930D
BnaCnng36930D protein.
      
 0.493
BnaC04g24520D
BnaC04g24520D protein.
      
 0.491
BnaAnng07660D
BnaAnng07660D protein.
      
 0.477
BnaA10g29550D
BnaA10g29550D protein.
      
 0.472
BnaCnng56900D
BnaCnng56900D protein.
      
 0.472
BnaA02g16180D
BnaA02g16180D protein.
    
 
 0.455
BnaCnng68450D
BnaCnng68450D protein.
    
 
 0.455
BnaC03g30240D
BnaC03g30240D protein.
      
 0.433
BnaC09g00560D
BnaC09g00560D protein.
      
 0.433
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.