STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA01g33050DBnaA01g33050D protein. (881 aa)    
Predicted Functional Partners:
BnaC08g46440D
BnaC08g46440D protein.
  
   
 0.575
BnaA05g36560D
BnaA05g36560D protein.
  
   
 0.568
BnaC03g34900D
BnaC03g34900D protein.
      
 0.559
BnaA01g29060D
BnaA01g29060D protein.
    
 
 0.541
BnaC01g36450D
BnaC01g36450D protein.
    
 
 0.541
BnaC03g63630D
BnaC03g63630D protein.
    
 
 0.530
BnaCnng18610D
BnaCnng18610D protein.
    
 
 0.530
BnaA01g21540D
Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family.
      
 0.495
BnaCnng45730D
BnaCnng45730D protein.
    
 
 0.488
BnaA05g10140D
BnaA05g10140D protein.
      
 0.441
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.