STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA09g41170DBnaA09g41170D protein. (464 aa)    
Predicted Functional Partners:
BnaC08g44820D
4-hydroxyphenylpyruvate dioxygenase.
   
 
 0.981
BnaC05g04530D
4-hydroxyphenylpyruvate dioxygenase.
   
 
 0.975
BnaA09g56680D
BnaA09g56680D protein.
    
 0.960
BnaA09g53100D
BnaA09g53100D protein.
  
 
 0.925
BnaA01g08240D
BnaA01g08240D protein.
    
 0.908
BnaC01g09790D
BnaC01g09790D protein.
    
 0.908
BnaC07g32410D
BnaC07g32410D protein.
     
 0.907
BnaA10g11210D
BnaA01g25820D protein.
     
 0.907
BnaA04g21230D
BnaA04g21230D protein; Belongs to the PAL/histidase family.
   
 
 0.892
BnaCnng52250D
Phenylalanine ammonia-lyase.
   
 
 0.862
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.