STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC05g12500DBnaC05g12500D protein. (522 aa)    
Predicted Functional Partners:
BnaC05g44430D
BnaC05g44430D protein.
    
 0.551
BnaA05g30100D
BnaA05g30100D protein.
    
 0.551
BnaA02g25890D
BnaA02g25890D protein.
    
 0.534
BnaC02g47740D
BnaC02g47740D protein.
    
 0.534
BnaC05g43740D
BnaC05g43740D protein.
    
 0.530
BnaA05g29410D
BnaA05g29410D protein.
    
 0.530
BnaA09g56340D
ALA-interacting subunit; Belongs to the CDC50/LEM3 family.
      
 0.467
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.