STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA01g27290DBnaA01g27290D protein. (1032 aa)    
Predicted Functional Partners:
BnaC01g30980D
BnaC01g30980D protein.
  
  
 
0.900
BnaC01g43970D
BnaC01g43970D protein.
  
  
 
0.900
BnaA03g00690D
BnaA03g00690D protein.
   
 
0.780
BnaC02g03460D
BnaC02g03460D protein.
   
 
0.780
BnaC03g60060D
BnaC03g60060D protein.
   
 
0.777
BnaA03g00680D
BnaA03g00680D protein.
   
 
 0.777
BnaC03g60070D
BnaC03g60070D protein.
   
 
 0.777
BnaA04g21500D
BnaA04g21500D protein.
   
 
 0.777
BnaC02g03700D
BnaC02g03700D protein.
   
 
 0.777
BnaC09g42470D
BnaC09g42470D protein.
   
 
 0.730
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.