STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA01g08060DBnaA01g08060D protein. (177 aa)    
Predicted Functional Partners:
BnaA08g28130D
BnaA08g28130D protein.
    
 0.768
BnaC06g02250D
BnaC06g02250D protein.
    
 0.768
BnaA03g59040D
BnaA03g59040D protein.
  
  
 
0.549
BnaA06g22940D
BnaA06g22940D protein.
      
 0.509
BnaA09g26520D
BnaA09g26520D protein.
   
  
 0.503
BnaA02g05570D
RuvB-like helicase; Belongs to the RuvB family.
    
 
 0.492
BnaC02g09460D
RuvB-like helicase; Belongs to the RuvB family.
    
 
 0.492
BnaC02g26240D
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
   
 
 0.491
BnaC09g37610D
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
   
 
 0.491
BnaA09g03590D
BnaA09g03590D protein.
    
 
 0.483
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.