STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA04g15170DBnaA04g15170D protein; Belongs to the class-I aminoacyl-tRNA synthetase family. (216 aa)    
Predicted Functional Partners:
BnaA09g03770D
BnaA09g03770D protein.
  
 
 0.644
BnaC02g39740D
BnaC02g39740D protein.
  
 
 0.644
BnaC03g29830D
BnaC03g29830D protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.639
BnaA08g25080D
BnaA08g25080D protein.
  
 
 0.620
BnaC08g15130D
BnaC08g15130D protein.
  
 
 0.620
BnaC08g41780D
BnaC08g41780D protein.
  
 
 0.620
BnaA09g47500D
BnaA09g47500D protein.
  
 
 0.620
BnaCnng05720D
Tyrosine--tRNA ligase.
  
  
 0.610
BnaC08g13740D
BnaC08g13740D protein.
  
 
 0.605
BnaC08g13750D
BnaC08g13750D protein.
  
 
 0.605
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.