STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA09g45790DBnaA09g45790D protein; Belongs to the iron/ascorbate-dependent oxidoreductase family. (304 aa)    
Predicted Functional Partners:
BnaC08g42870D
BnaC08g42870D protein.
     
  0.900
BnaA02g25400D
BnaA02g25400D protein.
     
  0.900
BnaC05g25340D
BnaC05g25340D protein; Belongs to the aldehyde dehydrogenase family.
     
 0.665
BnaC08g05150D
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
     
 0.665
BnaA08g04430D
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
     
 0.665
BnaC03g61970D
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
     
 0.659
BnaA03g59170D
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
     
 0.659
BnaC03g54910D
BnaC03g54910D protein.
   
 
  0.653
BnaC03g13560D
BnaC03g13560D protein.
   
 
  0.653
BnaA03g10890D
BnaA03g10890D protein.
   
 
  0.653
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.